STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQZ62505.1Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family. (518 aa)    
Predicted Functional Partners:
KQZ62504.1
Pilus assembly protein CpaB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.993
KQZ62507.1
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.982
KQZ62508.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.960
KQZ62751.1
Pilus assembly protein TadC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.953
KQZ64248.1
Flagellar protein FlaI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.876
KQZ62503.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.873
KQZ62506.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.865
KQZ61636.1
Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.812
KQZ61239.1
Conjugal transfer protein TrbB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.776
KQZ64065.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.718
Your Current Organism:
Sphingopyxis sp. Root1497
NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.