STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQZ62567.1LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (294 aa)    
Predicted Functional Partners:
KQZ62568.1
EBNA-1 nuclear protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.593
KQZ64488.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.582
KQZ62757.1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.573
KQZ62566.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.562
KQZ62571.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.562
KQZ62572.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.551
KQZ65790.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.542
KQZ60683.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.541
KQZ62569.1
Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.531
KQZ65886.1
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.516
Your Current Organism:
Sphingopyxis sp. Root1497
NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.