KQZ60674.1 protein (Sphingopyxis sp. Root1497)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQZ60674.1

GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (237 aa)

Predicted Functional Partners:

KQZ60672.1

0.921

KQZ65400.1

0.813

KQZ60673.1

0.798

KQZ64725.1

0.721

KQZ61384.1

0.721

KQZ63748.1

0.535

KQZ60780.1

0.535

KQZ61345.1

0.473

KQZ62026.1

0.463

KQZ64183.1

0.442

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KQZ60672.1	KQZ60673.1	ASD67_15265	ASD67_15270	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
KQZ60672.1	KQZ60674.1	ASD67_15265	ASD67_15275	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KQZ60672.1	KQZ64183.1	ASD67_15265	ASD67_06685	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
KQZ60673.1	KQZ60672.1	ASD67_15270	ASD67_15265	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
KQZ60673.1	KQZ60674.1	ASD67_15270	ASD67_15275	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
KQZ60674.1	KQZ60672.1	ASD67_15275	ASD67_15265	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KQZ60674.1	KQZ60673.1	ASD67_15275	ASD67_15270	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
KQZ60674.1	KQZ60780.1	ASD67_15275	ASD67_15855	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KQZ60674.1	KQZ61345.1	ASD67_15275	ASD67_19115	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.473
KQZ60674.1	KQZ61384.1	ASD67_15275	ASD67_19340	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KQZ60674.1	KQZ62026.1	ASD67_15275	ASD67_19825	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KQZ60674.1	KQZ63748.1	ASD67_15275	ASD67_04120	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KQZ60674.1	KQZ64183.1	ASD67_15275	ASD67_06685	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
KQZ60674.1	KQZ64725.1	ASD67_15275	ASD67_09780	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KQZ60674.1	KQZ65400.1	ASD67_15275	ASD67_03080	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
KQZ60780.1	KQZ60674.1	ASD67_15855	ASD67_15275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KQZ60780.1	KQZ65400.1	ASD67_15855	ASD67_03080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.558
KQZ61345.1	KQZ60674.1	ASD67_19115	ASD67_15275	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.473
KQZ61345.1	KQZ61384.1	ASD67_19115	ASD67_19340	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KQZ61345.1	KQZ62026.1	ASD67_19115	ASD67_19825	Glycosyl hydrolase family 5; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821