STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQZ61837.1Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1070 aa)    
Predicted Functional Partners:
KQZ61840.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.894
KQZ60692.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.769
KQZ61838.1
RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.742
KQZ63699.1
Sphingosine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
KQZ64809.1
Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.645
KQZ63690.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.638
KQZ61839.1
Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.635
KQZ64261.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.631
KQZ61648.1
Heavy metal resistance protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.626
KQZ65426.1
General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
Your Current Organism:
Sphingopyxis sp. Root1497
NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.