KQZ61855.1 protein (Sphingopyxis sp. Root1497)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KQZ61855.1

Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)

Predicted Functional Partners:

KQZ61857.1

0.869

KQZ61856.1

0.854

KQZ61858.1

0.854

ASD67_22120

0.516

KQZ61242.1

0.471

KQZ61639.1

0.471

KQZ61854.1

0.432

Your Current Organism:

Sphingopyxis sp. Root1497

NCBI taxonomy Id: 1736474
Other names: S. sp. Root1497

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASD67_22120	KQZ61242.1	ASD67_22120	ASD67_18510	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
ASD67_22120	KQZ61639.1	ASD67_22120	ASD67_20790	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
ASD67_22120	KQZ61855.1	ASD67_22120	ASD67_22095	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
ASD67_22120	KQZ61856.1	ASD67_22120	ASD67_22100	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
ASD67_22120	KQZ61857.1	ASD67_22120	ASD67_22105	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
ASD67_22120	KQZ61858.1	ASD67_22120	ASD67_22110	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.942
KQZ61242.1	ASD67_22120	ASD67_18510	ASD67_22120	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
KQZ61242.1	KQZ61855.1	ASD67_18510	ASD67_22095	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
KQZ61242.1	KQZ61856.1	ASD67_18510	ASD67_22100	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
KQZ61242.1	KQZ61858.1	ASD67_18510	ASD67_22110	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
KQZ61639.1	ASD67_22120	ASD67_20790	ASD67_22120	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
KQZ61639.1	KQZ61855.1	ASD67_20790	ASD67_22095	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
KQZ61639.1	KQZ61856.1	ASD67_20790	ASD67_22100	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
KQZ61639.1	KQZ61858.1	ASD67_20790	ASD67_22110	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
KQZ61854.1	KQZ61855.1	ASD67_22090	ASD67_22095	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
KQZ61854.1	KQZ61856.1	ASD67_22090	ASD67_22100	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
KQZ61854.1	KQZ61857.1	ASD67_22090	ASD67_22105	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KQZ61854.1	KQZ61858.1	ASD67_22090	ASD67_22110	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
KQZ61855.1	ASD67_22120	ASD67_22095	ASD67_22120	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
KQZ61855.1	KQZ61242.1	ASD67_22095	ASD67_18510	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Conjugal transfer protein TrbE; Type IV secretion system VirB4 family; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471