STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRB54897.1Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.970
KRB54898.1
Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
KRB54562.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.605
KRB53908.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.574
KRB54896.1
TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.573
KRB58437.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.558
KRB58040.1
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.501
KRB55819.1
Clp protease ClpS; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpS family.
  
     0.483
KRB59751.1
Redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.460
KRB58177.1
Redoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.460
Your Current Organism:
Flavobacterium sp. Root186
NCBI taxonomy Id: 1736485
Other names: F. sp. Root186
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.