KRB66312.1 protein (Noviherbaspirillum sp. Root189)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRB66312.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)

Predicted Functional Partners:

KRB66310.1

0.972

KRB66311.1

0.964

KRB66314.1

0.924

KRB66319.1

0.920

KRB66317.1

0.917

KRB66315.1

0.911

KRB66318.1

0.885

KRB66316.1

0.881

KRB67883.1

0.869

KRB66321.1

0.866

Your Current Organism:

Noviherbaspirillum sp. Root189

NCBI taxonomy Id: 1736487
Other names: N. sp. Root189

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRB66310.1	KRB66311.1	ASE07_10540	ASE07_10545	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
KRB66310.1	KRB66312.1	ASE07_10540	ASE07_10550	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
KRB66310.1	KRB66314.1	ASE07_10540	ASE07_10560	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
KRB66310.1	KRB66315.1	ASE07_10540	ASE07_10565	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KRB66310.1	KRB66316.1	ASE07_10540	ASE07_10570	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
KRB66310.1	KRB66317.1	ASE07_10540	ASE07_10575	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
KRB66310.1	KRB66318.1	ASE07_10540	ASE07_10580	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KRB66310.1	KRB66319.1	ASE07_10540	ASE07_10585	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.909
KRB66310.1	KRB66321.1	ASE07_10540	ASE07_10595	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.849
KRB66310.1	KRB67883.1	ASE07_10540	ASE07_09465	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
KRB66311.1	KRB66310.1	ASE07_10545	ASE07_10540	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion system protein ImpK; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
KRB66311.1	KRB66312.1	ASE07_10545	ASE07_10550	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
KRB66311.1	KRB66314.1	ASE07_10545	ASE07_10560	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
KRB66311.1	KRB66315.1	ASE07_10545	ASE07_10565	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
KRB66311.1	KRB66316.1	ASE07_10545	ASE07_10570	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
KRB66311.1	KRB66317.1	ASE07_10545	ASE07_10575	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.874
KRB66311.1	KRB66318.1	ASE07_10545	ASE07_10580	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
KRB66311.1	KRB66319.1	ASE07_10545	ASE07_10585	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
KRB66311.1	KRB66321.1	ASE07_10545	ASE07_10595	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
KRB66311.1	KRB67883.1	ASE07_10545	ASE07_09465	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966