STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRB78312.1Gluconate 5-dehydrogenase; Involved in the nonphosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate; Derived by automated computational analysis using gene prediction method: Protein Homology. (261 aa)    
Predicted Functional Partners:
KRB68015.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.902
KRB78919.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.902
KRB71688.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.902
KRB71154.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.902
KRB71156.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.902
ASE07_27615
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.902
ASE07_27810
Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.902
ASE07_27840
Carrier domain-containing protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 0.902
KRB70420.1
3-oxoacyl-ACP synthase; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.777
KRB78311.1
Aromatic compound catabolic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.774
Your Current Organism:
Noviherbaspirillum sp. Root189
NCBI taxonomy Id: 1736487
Other names: N. sp. Root189
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