KRC30628.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC30628.1

Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)

Predicted Functional Partners:

KRC24396.1

0.869

ASE31_25610

0.817

KRC30627.1

0.651

KRC30707.1

0.519

KRC30629.1

0.502

KRC28188.1

0.436

KRC12836.1

0.402

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_25610	KRC12836.1	ASE31_25610	ASE31_10445	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ASE31_25610	KRC24396.1	ASE31_25610	ASE31_21545	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
ASE31_25610	KRC28188.1	ASE31_25610	ASE31_13905	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ASE31_25610	KRC30628.1	ASE31_25610	ASE31_00100	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.817
KRC12836.1	ASE31_25610	ASE31_10445	ASE31_25610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
KRC12836.1	KRC28188.1	ASE31_10445	ASE31_13905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
KRC12836.1	KRC30628.1	ASE31_10445	ASE31_00100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KRC24396.1	ASE31_25610	ASE31_21545	ASE31_25610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.823
KRC24396.1	KRC30628.1	ASE31_21545	ASE31_00100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KRC28188.1	ASE31_25610	ASE31_13905	ASE31_25610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
KRC28188.1	KRC12836.1	ASE31_13905	ASE31_10445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
KRC28188.1	KRC30628.1	ASE31_13905	ASE31_00100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
KRC30627.1	KRC30628.1	ASE31_00095	ASE31_00100	Aromatic ring-opening dioxygenase LigB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
KRC30627.1	KRC30707.1	ASE31_00095	ASE31_00090	Aromatic ring-opening dioxygenase LigB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide chain release factor I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
KRC30628.1	ASE31_25610	ASE31_00100	ASE31_25610	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.817
KRC30628.1	KRC12836.1	ASE31_00100	ASE31_10445	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
KRC30628.1	KRC24396.1	ASE31_00100	ASE31_21545	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.869
KRC30628.1	KRC28188.1	ASE31_00100	ASE31_13905	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.436
KRC30628.1	KRC30627.1	ASE31_00100	ASE31_00095	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aromatic ring-opening dioxygenase LigB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
KRC30628.1	KRC30629.1	ASE31_00100	ASE31_00105	Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502