KRC23212.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC23212.1

Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)

Predicted Functional Partners:

KRC16998.1

0.743

KRC23213.1

0.701

KRC23390.1

0.657

KRC11773.1

0.653

KRC24304.1

0.652

KRC23214.1

0.637

tolB

0.630

KRC30567.1

0.625

KRC17571.1

0.621

KRC28142.1

0.602

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC11773.1	KRC16998.1	ASE31_11295	ASE31_07480	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC11773.1	KRC17571.1	ASE31_11295	ASE31_29305	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
KRC11773.1	KRC23212.1	ASE31_11295	ASE31_00890	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
KRC11773.1	KRC23390.1	ASE31_11295	ASE31_01900	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
KRC11773.1	KRC24304.1	ASE31_11295	ASE31_20985	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
KRC11773.1	KRC28142.1	ASE31_11295	ASE31_15310	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
KRC11773.1	KRC30567.1	ASE31_11295	ASE31_12010	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.662
KRC11773.1	tolB	ASE31_11295	ASE31_09340	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.	0.630
KRC16998.1	KRC11773.1	ASE31_07480	ASE31_11295	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC16998.1	KRC17571.1	ASE31_07480	ASE31_29305	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC16998.1	KRC23212.1	ASE31_07480	ASE31_00890	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC16998.1	KRC23390.1	ASE31_07480	ASE31_01900	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC16998.1	KRC24304.1	ASE31_07480	ASE31_20985	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC16998.1	KRC28142.1	ASE31_07480	ASE31_15310	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC16998.1	KRC30567.1	ASE31_07480	ASE31_12010	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC17571.1	KRC11773.1	ASE31_29305	ASE31_11295	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
KRC17571.1	KRC16998.1	ASE31_29305	ASE31_07480	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC17571.1	KRC23212.1	ASE31_29305	ASE31_00890	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.621
KRC17571.1	KRC23390.1	ASE31_29305	ASE31_01900	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
KRC17571.1	KRC24304.1	ASE31_29305	ASE31_20985	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.652