KRC23307.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC23307.1

Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (383 aa)

Predicted Functional Partners:

KRC23306.1

0.920

ubiG

0.763

ubiG-2

0.763

KRC28000.1

0.763

KRC21930.1

0.763

KRC20894.1

0.763

KRC20592.1

0.763

KRC18451.1

0.763

KRC27162.1

0.586

KRC27413.1

0.576

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC18451.1	KRC23307.1	ASE31_28070	ASE31_01435	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC20592.1	KRC23307.1	ASE31_25265	ASE31_01435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC20894.1	KRC23307.1	ASE31_24790	ASE31_01435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC21930.1	KRC23307.1	ASE31_22820	ASE31_01435	Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC23306.1	KRC23307.1	ASE31_01430	ASE31_01435	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KRC23306.1	KRC27162.1	ASE31_01430	ASE31_17215	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC23306.1	KRC27413.1	ASE31_01430	ASE31_17210	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.659
KRC23307.1	KRC18451.1	ASE31_01435	ASE31_28070	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC23307.1	KRC20592.1	ASE31_01435	ASE31_25265	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC23307.1	KRC20894.1	ASE31_01435	ASE31_24790	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC23307.1	KRC21930.1	ASE31_01435	ASE31_22820	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC23307.1	KRC23306.1	ASE31_01435	ASE31_01430	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KRC23307.1	KRC27162.1	ASE31_01435	ASE31_17215	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
KRC23307.1	KRC27413.1	ASE31_01435	ASE31_17210	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
KRC23307.1	KRC28000.1	ASE31_01435	ASE31_14495	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KRC23307.1	ubiG	ASE31_01435	ASE31_08435	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.	0.763
KRC23307.1	ubiG-2	ASE31_01435	ASE31_08970	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.	0.763
KRC27162.1	KRC23306.1	ASE31_17215	ASE31_01430	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC27162.1	KRC23307.1	ASE31_17215	ASE31_01435	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal-dependent phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
KRC27162.1	KRC27413.1	ASE31_17215	ASE31_17210	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931