KRC23465.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC23465.1

Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)

Predicted Functional Partners:

KRC23577.1

0.721

KRC23576.1

0.705

KRC25651.1

0.671

KRC25723.1

0.522

rpoH

0.502

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC23465.1	KRC23576.1	ASE31_02305	ASE31_02990	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KRC23465.1	KRC23577.1	ASE31_02305	ASE31_02995	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KRC23465.1	KRC25651.1	ASE31_02305	ASE31_18970	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KRC23465.1	KRC25723.1	ASE31_02305	ASE31_19390	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
KRC23465.1	rpoH	ASE31_02305	ASE31_02310	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase factor sigma-32; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.	0.502
KRC23576.1	KRC23465.1	ASE31_02990	ASE31_02305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KRC23576.1	KRC23577.1	ASE31_02990	ASE31_02995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KRC23576.1	KRC25651.1	ASE31_02990	ASE31_18970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
KRC23576.1	KRC25723.1	ASE31_02990	ASE31_19390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
KRC23577.1	KRC23465.1	ASE31_02995	ASE31_02305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
KRC23577.1	KRC23576.1	ASE31_02995	ASE31_02990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
KRC23577.1	KRC25651.1	ASE31_02995	ASE31_18970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
KRC23577.1	KRC25723.1	ASE31_02995	ASE31_19390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
KRC25651.1	KRC23465.1	ASE31_18970	ASE31_02305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KRC25651.1	KRC23576.1	ASE31_18970	ASE31_02990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.674
KRC25651.1	KRC23577.1	ASE31_18970	ASE31_02995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.730
KRC25651.1	KRC25723.1	ASE31_18970	ASE31_19390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.749
KRC25723.1	KRC23465.1	ASE31_19390	ASE31_02305	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
KRC25723.1	KRC23576.1	ASE31_19390	ASE31_02990	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
KRC25723.1	KRC23577.1	ASE31_19390	ASE31_02995	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900