STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRC24007.1DNAase; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)    
Predicted Functional Partners:
KRC23574.1
Spermidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.735
KRC23573.1
DNA-deoxyinosine glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.657
fliE
Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.620
KRC23572.1
Peptidase S1; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.572
KRC23575.1
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
   0.547
lolD
Lipoprotein ABC transporter ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
   
   0.492
KRC23571.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.472
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
 
  
 0.443
KRC24006.1
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.442
Your Current Organism:
Acidovorax sp. Root217
NCBI taxonomy Id: 1736492
Other names: A. sp. Root217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.