KRC23607.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

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[Homology]

Score

KRC23607.1

2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)

Predicted Functional Partners:

KRC27029.1

0.740

KRC14858.1

0.648

KRC23606.1

0.522

KRC28173.1

0.447

KRC27059.1

0.447

KRC17481.1

0.447

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC14858.1	KRC17481.1	ASE31_08950	ASE31_30160	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC23607.1	ASE31_08950	ASE31_03155	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC27029.1	ASE31_08950	ASE31_16470	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC27059.1	ASE31_08950	ASE31_16635	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC28173.1	ASE31_08950	ASE31_13240	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC17481.1	KRC14858.1	ASE31_30160	ASE31_08950	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC17481.1	KRC23607.1	ASE31_30160	ASE31_03155	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KRC23606.1	KRC23607.1	ASE31_03150	ASE31_03155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.522
KRC23607.1	KRC14858.1	ASE31_03155	ASE31_08950	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC23607.1	KRC17481.1	ASE31_03155	ASE31_30160	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KRC23607.1	KRC23606.1	ASE31_03155	ASE31_03150	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.522
KRC23607.1	KRC27029.1	ASE31_03155	ASE31_16470	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
KRC23607.1	KRC27059.1	ASE31_03155	ASE31_16635	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KRC23607.1	KRC28173.1	ASE31_03155	ASE31_13240	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KRC27029.1	KRC14858.1	ASE31_16470	ASE31_08950	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC27029.1	KRC23607.1	ASE31_16470	ASE31_03155	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.740
KRC27059.1	KRC14858.1	ASE31_16635	ASE31_08950	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC27059.1	KRC23607.1	ASE31_16635	ASE31_03155	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447
KRC28173.1	KRC14858.1	ASE31_13240	ASE31_08950	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC28173.1	KRC23607.1	ASE31_13240	ASE31_03155	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447