KRC23688.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC23688.1

Globin; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)

Predicted Functional Partners:

KRC23687.1

0.891

KRC24018.1

0.882

KRC16836.1

0.780

KRC28183.1

0.666

KRC20102.1

0.548

KRC23367.1

0.513

KRC23292.1

0.446

KRC28035.1

0.441

KRC23686.1

0.428

KRC24728.1

0.416

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC16836.1	KRC20102.1	ASE31_06895	ASE31_26370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC16836.1	KRC23367.1	ASE31_06895	ASE31_01775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC16836.1	KRC23687.1	ASE31_06895	ASE31_03600	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRC16836.1	KRC23688.1	ASE31_06895	ASE31_03605	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Globin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRC16836.1	KRC24728.1	ASE31_06895	ASE31_19820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.892
KRC20102.1	KRC16836.1	ASE31_26370	ASE31_06895	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC20102.1	KRC23367.1	ASE31_26370	ASE31_01775	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC20102.1	KRC23687.1	ASE31_26370	ASE31_03600	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
KRC20102.1	KRC23688.1	ASE31_26370	ASE31_03605	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Globin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KRC20102.1	KRC24728.1	ASE31_26370	ASE31_19820	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
KRC23292.1	KRC23687.1	ASE31_01350	ASE31_03600	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
KRC23292.1	KRC23688.1	ASE31_01350	ASE31_03605	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Globin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
KRC23367.1	KRC16836.1	ASE31_01775	ASE31_06895	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC23367.1	KRC20102.1	ASE31_01775	ASE31_26370	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC23367.1	KRC23687.1	ASE31_01775	ASE31_03600	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
KRC23367.1	KRC23688.1	ASE31_01775	ASE31_03605	Chemotaxis protein CheA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Globin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
KRC23686.1	KRC23687.1	ASE31_03595	ASE31_03600	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
KRC23686.1	KRC23688.1	ASE31_03595	ASE31_03605	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Globin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KRC23687.1	KRC16836.1	ASE31_03600	ASE31_06895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRC23687.1	KRC20102.1	ASE31_03600	ASE31_26370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573