KRC23725.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

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[Homology]

Score

KRC23725.1

Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)

Predicted Functional Partners:

KRC24023.1

0.999

KRC23724.1

0.951

KRC16899.1

0.945

KRC24024.1

0.914

KRC23685.1

0.902

KRC21010.1

0.885

KRC27882.1

0.864

KRC28127.1

0.864

KRC18256.1

0.864

KRC23930.1

0.862

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC16899.1	KRC23725.1	ASE31_07285	ASE31_03815	Starvation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KRC18256.1	KRC21010.1	ASE31_26960	ASE31_25240	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.734
KRC18256.1	KRC23685.1	ASE31_26960	ASE31_03590	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.601
KRC18256.1	KRC23725.1	ASE31_26960	ASE31_03815	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
KRC18256.1	KRC27882.1	ASE31_26960	ASE31_13840	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.455
KRC18256.1	KRC28127.1	ASE31_26960	ASE31_15205	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.660
KRC21010.1	KRC18256.1	ASE31_25240	ASE31_26960	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.734
KRC21010.1	KRC23725.1	ASE31_25240	ASE31_03815	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.885
KRC21010.1	KRC24023.1	ASE31_25240	ASE31_03820	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
KRC21010.1	KRC27882.1	ASE31_25240	ASE31_13840	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.669
KRC23685.1	KRC18256.1	ASE31_03590	ASE31_26960	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.601
KRC23685.1	KRC23725.1	ASE31_03590	ASE31_03815	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.902
KRC23685.1	KRC24023.1	ASE31_03590	ASE31_03820	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
KRC23724.1	KRC23725.1	ASE31_03810	ASE31_03815	RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
KRC23724.1	KRC24023.1	ASE31_03810	ASE31_03820	RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
KRC23725.1	KRC16899.1	ASE31_03815	ASE31_07285	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Starvation protein B; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KRC23725.1	KRC18256.1	ASE31_03815	ASE31_26960	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.864
KRC23725.1	KRC21010.1	ASE31_03815	ASE31_25240	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.885
KRC23725.1	KRC23685.1	ASE31_03815	ASE31_03590	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.902
KRC23725.1	KRC23724.1	ASE31_03815	ASE31_03810	Anti-anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase sigma factor RpoE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.951