KRC23897.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC23897.1

Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)

Predicted Functional Partners:

KRC23902.1

0.851

KRC23904.1

0.844

KRC23311.1

0.834

KRC19135.1

0.834

KRC12620.1

0.834

KRC25647.1

0.834

KRC24403.1

0.834

KRC20340.1

0.834

KRC22530.1

0.820

KRC17816.1

0.780

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12620.1	KRC23897.1	ASE31_10725	ASE31_04780	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC17816.1	KRC23897.1	ASE31_28850	ASE31_04780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRC19135.1	KRC23897.1	ASE31_05745	ASE31_04780	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC20340.1	KRC23897.1	ASE31_25500	ASE31_04780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC22530.1	KRC23897.1	ASE31_21860	ASE31_04780	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
KRC22530.1	KRC23902.1	ASE31_21860	ASE31_04815	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KRC23311.1	KRC23897.1	ASE31_01460	ASE31_04780	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC23897.1	KRC12620.1	ASE31_04780	ASE31_10725	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein TolA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC23897.1	KRC17816.1	ASE31_04780	ASE31_28850	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
KRC23897.1	KRC19135.1	ASE31_04780	ASE31_05745	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC23897.1	KRC20340.1	ASE31_04780	ASE31_25500	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC23897.1	KRC22530.1	ASE31_04780	ASE31_21860	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.820
KRC23897.1	KRC23311.1	ASE31_04780	ASE31_01460	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Energy transducer TonB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC23897.1	KRC23902.1	ASE31_04780	ASE31_04815	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KRC23897.1	KRC23904.1	ASE31_04780	ASE31_04825	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
KRC23897.1	KRC24403.1	ASE31_04780	ASE31_21010	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC23897.1	KRC25647.1	ASE31_04780	ASE31_18950	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
KRC23902.1	KRC22530.1	ASE31_04815	ASE31_21860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KRC23902.1	KRC23897.1	ASE31_04815	ASE31_04780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KRC23902.1	KRC23904.1	ASE31_04815	ASE31_04825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947