KRC23903.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC23903.1

Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)

Predicted Functional Partners:

KRC23904.1

0.948

KRC23902.1

0.808

KRC22530.1

0.786

KRC23901.1

0.728

KRC21939.1

0.698

KRC23899.1

0.688

KRC22531.1

0.679

KRC23928.1

0.653

KRC29476.1

0.643

KRC30708.1

0.642

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC21939.1	KRC22531.1	ASE31_22880	ASE31_21865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
KRC21939.1	KRC23903.1	ASE31_22880	ASE31_04820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
KRC21939.1	KRC23904.1	ASE31_22880	ASE31_04825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KRC21939.1	KRC29476.1	ASE31_22880	ASE31_12290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
KRC22530.1	KRC22531.1	ASE31_21860	ASE31_21865	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KRC22530.1	KRC23902.1	ASE31_21860	ASE31_04815	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KRC22530.1	KRC23903.1	ASE31_21860	ASE31_04820	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KRC22531.1	KRC21939.1	ASE31_21865	ASE31_22880	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.717
KRC22531.1	KRC22530.1	ASE31_21865	ASE31_21860	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KRC22531.1	KRC23901.1	ASE31_21865	ASE31_04805	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
KRC22531.1	KRC23903.1	ASE31_21865	ASE31_04820	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
KRC23899.1	KRC23901.1	ASE31_04790	ASE31_04805	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KRC23899.1	KRC23903.1	ASE31_04790	ASE31_04820	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.688
KRC23901.1	KRC22531.1	ASE31_04805	ASE31_21865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.682
KRC23901.1	KRC23899.1	ASE31_04805	ASE31_04790	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KRC23901.1	KRC23903.1	ASE31_04805	ASE31_04820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KRC23901.1	KRC23904.1	ASE31_04805	ASE31_04825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KRC23902.1	KRC22530.1	ASE31_04815	ASE31_21860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KRC23902.1	KRC23903.1	ASE31_04815	ASE31_04820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
KRC23902.1	KRC23904.1	ASE31_04815	ASE31_04825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947