KRC19328.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC19328.1

Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)

Predicted Functional Partners:

KRC19100.1

0.799

KRC12910.1

0.794

KRC16935.1

0.770

KRC19099.1

0.727

KRC29465.1

0.678

KRC27920.1

0.662

KRC19101.1

0.660

KRC27131.1

0.652

KRC23260.1

0.625

KRC23508.1

0.610

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12910.1	KRC16935.1	ASE31_10030	ASE31_07505	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.448
KRC12910.1	KRC19100.1	ASE31_10030	ASE31_05535	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
KRC12910.1	KRC19328.1	ASE31_10030	ASE31_05540	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
KRC12910.1	KRC23260.1	ASE31_10030	ASE31_01170	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
KRC12910.1	KRC27131.1	ASE31_10030	ASE31_17010	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.464
KRC12910.1	KRC27920.1	ASE31_10030	ASE31_14060	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.759
KRC12910.1	KRC29465.1	ASE31_10030	ASE31_12225	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
KRC16935.1	KRC12910.1	ASE31_07505	ASE31_10030	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.448
KRC16935.1	KRC19101.1	ASE31_07505	ASE31_05545	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
KRC16935.1	KRC19328.1	ASE31_07505	ASE31_05540	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
KRC16935.1	KRC23260.1	ASE31_07505	ASE31_01170	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Naphthalene 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
KRC16935.1	KRC27131.1	ASE31_07505	ASE31_17010	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.765
KRC16935.1	KRC27920.1	ASE31_07505	ASE31_14060	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
KRC16935.1	KRC29465.1	ASE31_07505	ASE31_12225	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.765
KRC19099.1	KRC19100.1	ASE31_05530	ASE31_05535	Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
KRC19099.1	KRC19101.1	ASE31_05530	ASE31_05545	Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
KRC19099.1	KRC19328.1	ASE31_05530	ASE31_05540	Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
KRC19100.1	KRC12910.1	ASE31_05535	ASE31_10030	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.642
KRC19100.1	KRC19099.1	ASE31_05535	ASE31_05530	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymethylenebutenolidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
KRC19100.1	KRC19101.1	ASE31_05535	ASE31_05545	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556