KRC19208.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC19208.1

Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)

Predicted Functional Partners:

putA

0.844

KRC23610.1

0.796

KRC11889.1

0.796

KRC17584.1

0.796

KRC20799.1

0.792

KRC23390.1

0.767

KRC24304.1

0.746

KRC27256.1

0.735

KRC16935.1

0.727

ribB

0.720

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC11889.1	KRC16935.1	ASE31_11960	ASE31_07505	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
KRC11889.1	KRC17584.1	ASE31_11960	ASE31_29370	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
KRC11889.1	KRC19208.1	ASE31_11960	ASE31_06175	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
KRC11889.1	KRC20799.1	ASE31_11960	ASE31_24235	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
KRC11889.1	KRC23610.1	ASE31_11960	ASE31_03170	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
KRC16935.1	KRC11889.1	ASE31_07505	ASE31_11960	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
KRC16935.1	KRC17584.1	ASE31_07505	ASE31_29370	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
KRC16935.1	KRC19208.1	ASE31_07505	ASE31_06175	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
KRC16935.1	KRC20799.1	ASE31_07505	ASE31_24235	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
KRC16935.1	KRC23610.1	ASE31_07505	ASE31_03170	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
KRC16935.1	putA	ASE31_07505	ASE31_05800	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.968
KRC16935.1	ribB	ASE31_07505	ASE31_10760	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.	0.444
KRC17584.1	KRC11889.1	ASE31_29370	ASE31_11960	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.785
KRC17584.1	KRC16935.1	ASE31_29370	ASE31_07505	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
KRC17584.1	KRC19208.1	ASE31_29370	ASE31_06175	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
KRC17584.1	KRC20799.1	ASE31_29370	ASE31_24235	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydrolipoamide dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
KRC17584.1	KRC23610.1	ASE31_29370	ASE31_03170	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KRC19208.1	KRC11889.1	ASE31_06175	ASE31_11960	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	ferredoxin-NADP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
KRC19208.1	KRC16935.1	ASE31_06175	ASE31_07505	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.727
KRC19208.1	KRC17584.1	ASE31_06175	ASE31_29370	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796