KRC14831.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC14831.1

Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)

Predicted Functional Partners:

KRC27185.1

0.932

KRC19207.1

0.908

KRC20783.1

0.908

htpG

0.892

KRC24333.1

0.835

KRC14832.1

0.816

KRC28197.1

0.788

KRC23846.1

0.754

cobB

0.745

KRC19130.1

0.743

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC14831.1	KRC14832.1	ASE31_08800	ASE31_08805	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
KRC14831.1	KRC19130.1	ASE31_08800	ASE31_05720	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC14831.1	KRC19207.1	ASE31_08800	ASE31_06170	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase SNF2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC14831.1	KRC20783.1	ASE31_08800	ASE31_24145	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC14831.1	KRC23846.1	ASE31_08800	ASE31_04485	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyoxylate/hydroxypyruvate reductase A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
KRC14831.1	KRC24333.1	ASE31_08800	ASE31_21140	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.835
KRC14831.1	KRC27185.1	ASE31_08800	ASE31_17365	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
KRC14831.1	KRC28197.1	ASE31_08800	ASE31_14540	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788
KRC14831.1	cobB	ASE31_08800	ASE31_06375	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-dependent deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily.	0.745
KRC14831.1	htpG	ASE31_08800	ASE31_13700	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Heat-shock protein Hsp90; Molecular chaperone. Has ATPase activity.	0.892
KRC14832.1	KRC14831.1	ASE31_08805	ASE31_08800	Thioesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.816
KRC19130.1	KRC14831.1	ASE31_05720	ASE31_08800	DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC19130.1	KRC19207.1	ASE31_05720	ASE31_06170	DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase SNF2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
KRC19130.1	KRC20783.1	ASE31_05720	ASE31_24145	DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
KRC19130.1	KRC27185.1	ASE31_05720	ASE31_17365	DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.529
KRC19130.1	KRC28197.1	ASE31_05720	ASE31_14540	DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
KRC19207.1	KRC14831.1	ASE31_06170	ASE31_08800	Helicase SNF2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC19207.1	KRC19130.1	ASE31_06170	ASE31_05720	Helicase SNF2; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
KRC19207.1	KRC27185.1	ASE31_06170	ASE31_17365	Helicase SNF2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KRC20783.1	KRC14831.1	ASE31_24145	ASE31_08800	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908