crcB protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

crcB

Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (128 aa)

Predicted Functional Partners:

KRC15021.1

0.637

KRC14841.1

0.614

KRC14842.1

0.591

KRC14843.1

0.589

KRC19178.1

0.457

KRC14892.1

0.457

KRC12954.1

0.457

KRC16836.1

0.418

ppa

0.407

KRC12903.1

0.404

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12903.1	crcB	ASE31_09990	ASE31_08850	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.404
KRC12954.1	crcB	ASE31_10275	ASE31_08850	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.457
KRC14841.1	KRC14842.1	ASE31_08855	ASE31_08860	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
KRC14841.1	KRC14843.1	ASE31_08855	ASE31_08865	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
KRC14841.1	KRC15021.1	ASE31_08855	ASE31_08845	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.	0.431
KRC14841.1	crcB	ASE31_08855	ASE31_08850	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.614
KRC14842.1	KRC14841.1	ASE31_08860	ASE31_08855	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
KRC14842.1	KRC14843.1	ASE31_08860	ASE31_08865	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KRC14842.1	KRC15021.1	ASE31_08860	ASE31_08845	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.	0.425
KRC14842.1	crcB	ASE31_08860	ASE31_08850	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.591
KRC14843.1	KRC14841.1	ASE31_08865	ASE31_08855	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
KRC14843.1	KRC14842.1	ASE31_08865	ASE31_08860	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KRC14843.1	KRC15021.1	ASE31_08865	ASE31_08845	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.	0.421
KRC14843.1	crcB	ASE31_08865	ASE31_08850	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.589
KRC14892.1	crcB	ASE31_09155	ASE31_08850	DNA alkylation response protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.457
KRC15021.1	KRC14841.1	ASE31_08845	ASE31_08855	3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
KRC15021.1	KRC14842.1	ASE31_08845	ASE31_08860	3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
KRC15021.1	KRC14843.1	ASE31_08845	ASE31_08865	3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
KRC15021.1	crcB	ASE31_08845	ASE31_08850	3-isopropylmalate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LOG family.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.637
KRC16836.1	crcB	ASE31_06895	ASE31_08850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.	0.418