KRC15025.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

KRC15025.1

Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (706 aa)

Predicted Functional Partners:

KRC23929.1

0.630

KRC29478.1

0.626

KRC21940.1

0.623

KRC30708.1

0.564

KRC15026.1

0.548

KRC14867.1

0.538

KRC29480.1

0.515

KRC21939.1

0.507

KRC23901.1

0.493

KRC23928.1

0.491

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC14867.1	KRC15025.1	ASE31_09010	ASE31_09005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KRC14867.1	KRC15026.1	ASE31_09010	ASE31_09015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
KRC15025.1	KRC14867.1	ASE31_09005	ASE31_09010	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KRC15025.1	KRC15026.1	ASE31_09005	ASE31_09015	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KRC15025.1	KRC21939.1	ASE31_09005	ASE31_22880	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KRC15025.1	KRC21940.1	ASE31_09005	ASE31_22885	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KRC15025.1	KRC23901.1	ASE31_09005	ASE31_04805	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
KRC15025.1	KRC23928.1	ASE31_09005	ASE31_04955	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
KRC15025.1	KRC23929.1	ASE31_09005	ASE31_04960	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630
KRC15025.1	KRC29478.1	ASE31_09005	ASE31_12300	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
KRC15025.1	KRC29480.1	ASE31_09005	ASE31_12310	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
KRC15025.1	KRC30708.1	ASE31_09005	ASE31_00120	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
KRC15026.1	KRC14867.1	ASE31_09015	ASE31_09010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.888
KRC15026.1	KRC15025.1	ASE31_09015	ASE31_09005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KRC21939.1	KRC15025.1	ASE31_22880	ASE31_09005	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KRC21939.1	KRC21940.1	ASE31_22880	ASE31_22885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
KRC21939.1	KRC23929.1	ASE31_22880	ASE31_04960	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
KRC21939.1	KRC29478.1	ASE31_22880	ASE31_12300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KRC21940.1	KRC15025.1	ASE31_22885	ASE31_09005	Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KRC21940.1	KRC21939.1	ASE31_22885	ASE31_22880	Iron dicitrate transport regulator FecR; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956