KRC14922.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC14922.1

Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)

Predicted Functional Partners:

KRC14721.1

0.965

KRC14870.1

0.965

KRC15034.1

0.965

KRC24302.1

0.965

KRC24305.1

0.965

KRC24413.1

0.965

KRC21903.1

0.965

KRC20710.1

0.965

KRC20971.1

0.965

KRC20729.1

0.965

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC14721.1	KRC14870.1	ASE31_08160	ASE31_09030	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KRC14721.1	KRC14922.1	ASE31_08160	ASE31_09320	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
KRC14721.1	KRC15034.1	ASE31_08160	ASE31_09400	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KRC14721.1	KRC20710.1	ASE31_08160	ASE31_23730	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.957
KRC14721.1	KRC20729.1	ASE31_08160	ASE31_23840	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
KRC14721.1	KRC20971.1	ASE31_08160	ASE31_23735	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KRC14721.1	KRC21903.1	ASE31_08160	ASE31_22670	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
KRC14721.1	KRC24302.1	ASE31_08160	ASE31_20975	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KRC14721.1	KRC24305.1	ASE31_08160	ASE31_20995	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KRC14721.1	KRC24413.1	ASE31_08160	ASE31_21420	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.920
KRC14870.1	KRC14721.1	ASE31_09030	ASE31_08160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.922
KRC14870.1	KRC14922.1	ASE31_09030	ASE31_09320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilZ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
KRC14870.1	KRC15034.1	ASE31_09030	ASE31_09400	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
KRC14870.1	KRC20710.1	ASE31_09030	ASE31_23730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795
KRC14870.1	KRC20729.1	ASE31_09030	ASE31_23840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
KRC14870.1	KRC20971.1	ASE31_09030	ASE31_23735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
KRC14870.1	KRC21903.1	ASE31_09030	ASE31_22670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.872
KRC14870.1	KRC24302.1	ASE31_09030	ASE31_20975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
KRC14870.1	KRC24305.1	ASE31_09030	ASE31_20995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
KRC14870.1	KRC24413.1	ASE31_09030	ASE31_21420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.676