ASE31_09370 protein (Acidovorax sp. Root217)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

ASE31_09370

DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (364 aa)

Predicted Functional Partners:

KRC17491.1

0.644

KRC29450.1

0.572

KRC17454.1

0.572

KRC17617.1

0.543

KRC14930.1

0.478

KRC24727.1

0.470

KRC27005.1

0.444

KRC26872.1

0.425

KRC23163.1

0.412

KRC23482.1

0.412

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_09370	KRC14930.1	ASE31_09370	ASE31_09375	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.478
ASE31_09370	KRC17454.1	ASE31_09370	ASE31_29980	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
ASE31_09370	KRC17491.1	ASE31_09370	ASE31_30220	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644
ASE31_09370	KRC17617.1	ASE31_09370	ASE31_29540	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
ASE31_09370	KRC23163.1	ASE31_09370	ASE31_00610	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ASE31_09370	KRC23482.1	ASE31_09370	ASE31_02415	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
ASE31_09370	KRC24727.1	ASE31_09370	ASE31_19815	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
ASE31_09370	KRC26872.1	ASE31_09370	ASE31_15570	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
ASE31_09370	KRC27005.1	ASE31_09370	ASE31_16325	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemerythrin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
ASE31_09370	KRC29450.1	ASE31_09370	ASE31_12145	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
KRC14930.1	ASE31_09370	ASE31_09375	ASE31_09370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
KRC17454.1	ASE31_09370	ASE31_29980	ASE31_09370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
KRC17454.1	KRC17491.1	ASE31_29980	ASE31_30220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC17617.1	ASE31_29980	ASE31_29540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC23163.1	ASE31_29980	ASE31_00610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
KRC17454.1	KRC23482.1	ASE31_29980	ASE31_02415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
KRC17454.1	KRC24727.1	ASE31_29980	ASE31_19815	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
KRC17454.1	KRC26872.1	ASE31_29980	ASE31_15570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17454.1	KRC29450.1	ASE31_29980	ASE31_12145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC17491.1	ASE31_09370	ASE31_30220	ASE31_09370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.644