KRC14960.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC14960.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)

Predicted Functional Partners:

KRC15036.1

0.668

KRC14961.1

0.620

KRC14959.1

0.531

KRC14958.1

0.506

KRC15037.1

0.417

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC14958.1	KRC14959.1	ASE31_09525	ASE31_09530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
KRC14958.1	KRC14960.1	ASE31_09525	ASE31_09540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KRC14958.1	KRC14961.1	ASE31_09525	ASE31_09545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KRC14958.1	KRC15036.1	ASE31_09525	ASE31_09535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KRC14959.1	KRC14958.1	ASE31_09530	ASE31_09525	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
KRC14959.1	KRC14960.1	ASE31_09530	ASE31_09540	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
KRC14959.1	KRC14961.1	ASE31_09530	ASE31_09545	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
KRC14959.1	KRC15036.1	ASE31_09530	ASE31_09535	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
KRC14960.1	KRC14958.1	ASE31_09540	ASE31_09525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KRC14960.1	KRC14959.1	ASE31_09540	ASE31_09530	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.531
KRC14960.1	KRC14961.1	ASE31_09540	ASE31_09545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
KRC14960.1	KRC15036.1	ASE31_09540	ASE31_09535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
KRC14960.1	KRC15037.1	ASE31_09540	ASE31_09550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.417
KRC14961.1	KRC14958.1	ASE31_09545	ASE31_09525	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
KRC14961.1	KRC14959.1	ASE31_09545	ASE31_09530	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.539
KRC14961.1	KRC14960.1	ASE31_09545	ASE31_09540	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.620
KRC14961.1	KRC15036.1	ASE31_09545	ASE31_09535	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
KRC14961.1	KRC15037.1	ASE31_09545	ASE31_09550	5-oxoprolinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.506
KRC15036.1	KRC14958.1	ASE31_09535	ASE31_09525	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KRC15036.1	KRC14959.1	ASE31_09535	ASE31_09530	C4-dicarboxylate ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911