KRC12988.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

KRC12988.1

Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)

Predicted Functional Partners:

KRC12946.1

0.622

rpoD

0.592

KRC14661.1

0.534

KRC20765.1

0.457

KRC14663.1

0.440

KRC12945.1

0.415

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12945.1	KRC12988.1	ASE31_10225	ASE31_10230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KRC12946.1	KRC12988.1	ASE31_10235	ASE31_10230	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
KRC12988.1	KRC12945.1	ASE31_10230	ASE31_10225	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KRC12988.1	KRC12946.1	ASE31_10230	ASE31_10235	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
KRC12988.1	KRC14661.1	ASE31_10230	ASE31_07820	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
KRC12988.1	KRC14663.1	ASE31_10230	ASE31_07840	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
KRC12988.1	KRC20765.1	ASE31_10230	ASE31_24040	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
KRC12988.1	rpoD	ASE31_10230	ASE31_05075	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.592
KRC14661.1	KRC12988.1	ASE31_07820	ASE31_10230	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
KRC14661.1	KRC14663.1	ASE31_07820	ASE31_07840	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
KRC14663.1	KRC12988.1	ASE31_07840	ASE31_10230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
KRC14663.1	KRC14661.1	ASE31_07840	ASE31_07820	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
KRC20765.1	KRC12988.1	ASE31_24040	ASE31_10230	Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
KRC20765.1	rpoD	ASE31_24040	ASE31_05075	Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.472
rpoD	KRC12988.1	ASE31_05075	ASE31_10230	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.592
rpoD	KRC20765.1	ASE31_05075	ASE31_24040	RNA polymerase subunit sigma; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	Adenosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472