KRC12858.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC12858.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)

Predicted Functional Partners:

KRC23150.1

0.809

KRC27034.1

0.809

KRC27037.1

0.787

KRC17565.1

0.483

KRC12845.1

0.466

KRC26913.1

0.415

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12845.1	KRC12858.1	ASE31_10505	ASE31_10510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KRC12858.1	KRC12845.1	ASE31_10510	ASE31_10505	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.466
KRC12858.1	KRC17565.1	ASE31_10510	ASE31_29275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KRC12858.1	KRC23150.1	ASE31_10510	ASE31_00545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KRC12858.1	KRC26913.1	ASE31_10510	ASE31_15800	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KRC12858.1	KRC27034.1	ASE31_10510	ASE31_16495	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KRC12858.1	KRC27037.1	ASE31_10510	ASE31_16510	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.787
KRC17565.1	KRC12858.1	ASE31_29275	ASE31_10510	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.483
KRC17565.1	KRC27037.1	ASE31_29275	ASE31_16510	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.424
KRC23150.1	KRC12858.1	ASE31_00545	ASE31_10510	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KRC23150.1	KRC27037.1	ASE31_00545	ASE31_16510	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.788
KRC26913.1	KRC12858.1	ASE31_15800	ASE31_10510	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KRC26913.1	KRC27034.1	ASE31_15800	ASE31_16495	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KRC26913.1	KRC27037.1	ASE31_15800	ASE31_16510	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.523
KRC27034.1	KRC12858.1	ASE31_16495	ASE31_10510	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KRC27034.1	KRC26913.1	ASE31_16495	ASE31_15800	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KRC27034.1	KRC27037.1	ASE31_16495	ASE31_16510	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	0.901
KRC27037.1	KRC12858.1	ASE31_16510	ASE31_10510	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.787
KRC27037.1	KRC17565.1	ASE31_16510	ASE31_29275	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KRC27037.1	KRC23150.1	ASE31_16510	ASE31_00545	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.788