KRC11780.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC11780.1

ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)

Predicted Functional Partners:

KRC23577.1

0.822

KRC25651.1

0.819

KRC25723.1

0.796

KRC11781.1

0.658

KRC11782.1

0.656

KRC23576.1

0.511

KRC11783.1

0.450

KRC25724.1

0.439

KRC11779.1

0.431

KRC25743.1

0.418

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC11779.1	KRC11780.1	ASE31_11335	ASE31_11340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
KRC11780.1	KRC11779.1	ASE31_11340	ASE31_11335	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
KRC11780.1	KRC11781.1	ASE31_11340	ASE31_11345	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC11780.1	KRC11782.1	ASE31_11340	ASE31_11350	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
KRC11780.1	KRC11783.1	ASE31_11340	ASE31_11355	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.450
KRC11780.1	KRC23576.1	ASE31_11340	ASE31_02990	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
KRC11780.1	KRC23577.1	ASE31_11340	ASE31_02995	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.822
KRC11780.1	KRC25651.1	ASE31_11340	ASE31_18970	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
KRC11780.1	KRC25723.1	ASE31_11340	ASE31_19390	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.796
KRC11780.1	KRC25724.1	ASE31_11340	ASE31_19395	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
KRC11780.1	KRC25743.1	ASE31_11340	ASE31_19190	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tricarboxylic transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.418
KRC11781.1	KRC11780.1	ASE31_11345	ASE31_11340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC11781.1	KRC11782.1	ASE31_11345	ASE31_11350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KRC11781.1	KRC11783.1	ASE31_11345	ASE31_11355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.605
KRC11782.1	KRC11780.1	ASE31_11350	ASE31_11340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
KRC11782.1	KRC11781.1	ASE31_11350	ASE31_11345	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.968
KRC11782.1	KRC11783.1	ASE31_11350	ASE31_11355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	0.614
KRC11783.1	KRC11780.1	ASE31_11355	ASE31_11340	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.450
KRC11783.1	KRC11781.1	ASE31_11355	ASE31_11345	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.605
KRC11783.1	KRC11782.1	ASE31_11355	ASE31_11350	LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.614