KRC27779.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC27779.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (355 aa)

Predicted Functional Partners:

KRC27253.1

0.619

KRC28107.1

0.568

KRC27139.1

0.564

KRC24737.1

0.545

KRC23576.1

0.544

KRC28173.1

0.524

KRC28134.1

0.487

KRC27131.1

0.475

KRC25724.1

0.464

KRC24735.1

0.460

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC23576.1	KRC25724.1	ASE31_02990	ASE31_19395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Tripartite tricarboxylate transporter TctB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
KRC23576.1	KRC27779.1	ASE31_02990	ASE31_13245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
KRC24735.1	KRC24737.1	ASE31_19865	ASE31_19875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
KRC24735.1	KRC27779.1	ASE31_19865	ASE31_13245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KRC24735.1	KRC28134.1	ASE31_19865	ASE31_15250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
KRC24737.1	KRC24735.1	ASE31_19875	ASE31_19865	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.704
KRC24737.1	KRC27779.1	ASE31_19875	ASE31_13245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
KRC24737.1	KRC28134.1	ASE31_19875	ASE31_15250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
KRC25724.1	KRC23576.1	ASE31_19395	ASE31_02990	Tripartite tricarboxylate transporter TctB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
KRC25724.1	KRC27779.1	ASE31_19395	ASE31_13245	Tripartite tricarboxylate transporter TctB; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
KRC27131.1	KRC27779.1	ASE31_17010	ASE31_13245	Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KRC27139.1	KRC27253.1	ASE31_17055	ASE31_17730	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
KRC27139.1	KRC27779.1	ASE31_17055	ASE31_13245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
KRC27139.1	KRC28107.1	ASE31_17055	ASE31_15090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
KRC27139.1	KRC28134.1	ASE31_17055	ASE31_15250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
KRC27253.1	KRC27139.1	ASE31_17730	ASE31_17055	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
KRC27253.1	KRC27779.1	ASE31_17730	ASE31_13245	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
KRC27253.1	KRC28107.1	ASE31_17730	ASE31_15090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KRC27253.1	KRC28134.1	ASE31_17730	ASE31_15250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspL; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
KRC27779.1	KRC23576.1	ASE31_13245	ASE31_02990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544