KRC27906.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC27906.1

Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology. (198 aa)

Predicted Functional Partners:

KRC12890.1

0.743

cobS

0.566

KRC14984.1

0.553

KRC28150.1

0.551

KRC21440.1

0.534

cobT

0.513

KRC27405.1

0.501

KRC27130.1

0.501

KRC21404.1

0.501

KRC20988.1

0.493

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12890.1	KRC27906.1	ASE31_09925	ASE31_13965	Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC12890.1	cobS	ASE31_09925	ASE31_15290	Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	0.996
KRC12890.1	cobT	ASE31_09925	ASE31_09840	Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).	0.987
KRC14984.1	KRC27906.1	ASE31_09680	ASE31_13965	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
KRC20988.1	KRC27906.1	ASE31_24495	ASE31_13965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
KRC21404.1	KRC27906.1	ASE31_23350	ASE31_13965	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
KRC21440.1	KRC27906.1	ASE31_23545	ASE31_13965	NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
KRC27130.1	KRC27405.1	ASE31_17005	ASE31_17000	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
KRC27130.1	KRC27906.1	ASE31_17005	ASE31_13965	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
KRC27405.1	KRC27130.1	ASE31_17000	ASE31_17005	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
KRC27405.1	KRC27906.1	ASE31_17000	ASE31_13965	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
KRC27906.1	KRC12890.1	ASE31_13965	ASE31_09925	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Adenosylcobinamide-phosphate guanylyltransferase; Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate.	0.743
KRC27906.1	KRC14984.1	ASE31_13965	ASE31_09680	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.553
KRC27906.1	KRC20988.1	ASE31_13965	ASE31_24495	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.493
KRC27906.1	KRC21404.1	ASE31_13965	ASE31_23350	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
KRC27906.1	KRC21440.1	ASE31_13965	ASE31_23545	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.534
KRC27906.1	KRC27130.1	ASE31_13965	ASE31_17005	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
KRC27906.1	KRC27405.1	ASE31_13965	ASE31_17000	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
KRC27906.1	KRC28150.1	ASE31_13965	ASE31_15370	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
KRC27906.1	cobS	ASE31_13965	ASE31_15290	Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cobalamin synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.	0.566