KRC27942.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC27942.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)

Predicted Functional Partners:

KRC27941.1

0.961

KRC27937.1

0.748

KRC27940.1

0.732

KRC27938.1

0.701

KRC27939.1

0.623

KRC27151.1

0.479

KRC19272.1

0.451

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC19272.1	KRC27942.1	ASE31_06555	ASE31_14175	Glucokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
KRC27151.1	KRC27939.1	ASE31_17145	ASE31_14160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KRC27151.1	KRC27940.1	ASE31_17145	ASE31_14165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
KRC27151.1	KRC27942.1	ASE31_17145	ASE31_14175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
KRC27937.1	KRC27938.1	ASE31_14150	ASE31_14155	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
KRC27937.1	KRC27939.1	ASE31_14150	ASE31_14160	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KRC27937.1	KRC27940.1	ASE31_14150	ASE31_14165	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.965
KRC27937.1	KRC27941.1	ASE31_14150	ASE31_14170	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.575
KRC27937.1	KRC27942.1	ASE31_14150	ASE31_14175	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KRC27938.1	KRC27937.1	ASE31_14155	ASE31_14150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
KRC27938.1	KRC27939.1	ASE31_14155	ASE31_14160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
KRC27938.1	KRC27940.1	ASE31_14155	ASE31_14165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
KRC27938.1	KRC27941.1	ASE31_14155	ASE31_14170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.564
KRC27938.1	KRC27942.1	ASE31_14155	ASE31_14175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
KRC27939.1	KRC27151.1	ASE31_14160	ASE31_17145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
KRC27939.1	KRC27937.1	ASE31_14160	ASE31_14150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DoxX family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.977
KRC27939.1	KRC27938.1	ASE31_14160	ASE31_14155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.995
KRC27939.1	KRC27940.1	ASE31_14160	ASE31_14165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KRC27939.1	KRC27941.1	ASE31_14160	ASE31_14170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.521
KRC27939.1	KRC27942.1	ASE31_14160	ASE31_14175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623