STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRC28024.1Secretion protein HlyD; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)    
Predicted Functional Partners:
KRC28025.1
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.955
KRC28023.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.928
KRC28022.1
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.919
macB
Macrolide transporter; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.854
KRC20758.1
Channel protein TolC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.810
KRC14784.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.754
KRC28463.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.737
KRC24899.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.696
KRC23892.1
RND transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.680
KRC23915.1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.680
Your Current Organism:
Acidovorax sp. Root217
NCBI taxonomy Id: 1736492
Other names: A. sp. Root217
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.