KRC28206.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC28206.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (772 aa)

Predicted Functional Partners:

KRC12949.1

0.863

KRC19171.1

0.862

KRC21905.1

0.861

KRC17491.1

0.832

KRC16836.1

0.817

KRC24302.1

0.792

KRC20847.1

0.764

KRC20971.1

0.756

KRC21903.1

0.755

KRC14721.1

0.750

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12949.1	KRC14721.1	ASE31_10250	ASE31_08160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
KRC12949.1	KRC16836.1	ASE31_10250	ASE31_06895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KRC12949.1	KRC17491.1	ASE31_10250	ASE31_30220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
KRC12949.1	KRC19171.1	ASE31_10250	ASE31_05955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.960
KRC12949.1	KRC20847.1	ASE31_10250	ASE31_24520	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KRC12949.1	KRC20971.1	ASE31_10250	ASE31_23735	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KRC12949.1	KRC21903.1	ASE31_10250	ASE31_22670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
KRC12949.1	KRC21905.1	ASE31_10250	ASE31_22680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
KRC12949.1	KRC24302.1	ASE31_10250	ASE31_20975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
KRC12949.1	KRC28206.1	ASE31_10250	ASE31_15065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
KRC14721.1	KRC12949.1	ASE31_08160	ASE31_10250	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
KRC14721.1	KRC16836.1	ASE31_08160	ASE31_06895	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC14721.1	KRC17491.1	ASE31_08160	ASE31_30220	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC14721.1	KRC19171.1	ASE31_08160	ASE31_05955	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KRC14721.1	KRC20847.1	ASE31_08160	ASE31_24520	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	PAS domain S-box protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KRC14721.1	KRC20971.1	ASE31_08160	ASE31_23735	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KRC14721.1	KRC21903.1	ASE31_08160	ASE31_22670	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
KRC14721.1	KRC21905.1	ASE31_08160	ASE31_22680	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KRC14721.1	KRC24302.1	ASE31_08160	ASE31_20975	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
KRC14721.1	KRC28206.1	ASE31_08160	ASE31_15065	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750