KRC28128.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC28128.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)

Predicted Functional Partners:

KRC28127.1

0.921

KRC28126.1

0.773

KRC23685.1

0.754

KRC27882.1

0.741

KRC27881.1

0.733

lpxC

0.596

KRC17448.1

0.559

KRC28125.1

0.536

KRC17866.1

0.472

KRC28124.1

0.434

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC17448.1	KRC23685.1	ASE31_29945	ASE31_03590	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.475
KRC17448.1	KRC27882.1	ASE31_29945	ASE31_13840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.515
KRC17448.1	KRC28127.1	ASE31_29945	ASE31_15205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.480
KRC17448.1	KRC28128.1	ASE31_29945	ASE31_15210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
KRC17866.1	KRC27881.1	ASE31_29140	ASE31_13835	Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KRC17866.1	KRC28128.1	ASE31_29140	ASE31_15210	Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
KRC23685.1	KRC17448.1	ASE31_03590	ASE31_29945	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KRC23685.1	KRC27881.1	ASE31_03590	ASE31_13835	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KRC23685.1	KRC28128.1	ASE31_03590	ASE31_15210	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
KRC27881.1	KRC17866.1	ASE31_13835	ASE31_29140	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
KRC27881.1	KRC23685.1	ASE31_13835	ASE31_03590	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma-24; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.705
KRC27881.1	KRC27882.1	ASE31_13835	ASE31_13840	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.956
KRC27881.1	KRC28127.1	ASE31_13835	ASE31_15205	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.661
KRC27881.1	KRC28128.1	ASE31_13835	ASE31_15210	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
KRC27882.1	KRC17448.1	ASE31_13840	ASE31_29945	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
KRC27882.1	KRC27881.1	ASE31_13840	ASE31_13835	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	RNA polymerase subunit sigma-70; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.956
KRC27882.1	KRC28128.1	ASE31_13840	ASE31_15210	RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
KRC28124.1	KRC28125.1	ASE31_15190	ASE31_15195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.590
KRC28124.1	KRC28126.1	ASE31_15190	ASE31_15200	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.421
KRC28124.1	KRC28127.1	ASE31_15190	ASE31_15205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.429