KRC28149.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC28149.1

Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)

Predicted Functional Partners:

KRC28150.1

0.992

KRC28221.1

0.971

KRC19282.1

0.953

KRC19097.1

0.938

KRC27925.1

0.908

KRC23382.1

0.907

KRC15020.1

0.876

KRC23381.1

0.857

KRC27926.1

0.845

KRC19281.1

0.809

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC15020.1	KRC19097.1	ASE31_08790	ASE31_05520	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KRC15020.1	KRC19281.1	ASE31_08790	ASE31_06615	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.846
KRC15020.1	KRC19282.1	ASE31_08790	ASE31_06620	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
KRC15020.1	KRC23381.1	ASE31_08790	ASE31_01850	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.977
KRC15020.1	KRC23382.1	ASE31_08790	ASE31_01855	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
KRC15020.1	KRC27925.1	ASE31_08790	ASE31_14085	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.778
KRC15020.1	KRC27926.1	ASE31_08790	ASE31_14090	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.865
KRC15020.1	KRC28149.1	ASE31_08790	ASE31_15365	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
KRC15020.1	KRC28150.1	ASE31_08790	ASE31_15370	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
KRC15020.1	KRC28221.1	ASE31_08790	ASE31_15375	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.853
KRC19097.1	KRC15020.1	ASE31_05520	ASE31_08790	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KRC19097.1	KRC19281.1	ASE31_05520	ASE31_06615	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.878
KRC19097.1	KRC19282.1	ASE31_05520	ASE31_06620	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KRC19097.1	KRC23381.1	ASE31_05520	ASE31_01850	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.878
KRC19097.1	KRC23382.1	ASE31_05520	ASE31_01855	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KRC19097.1	KRC27925.1	ASE31_05520	ASE31_14085	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.518
KRC19097.1	KRC27926.1	ASE31_05520	ASE31_14090	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.902
KRC19097.1	KRC28149.1	ASE31_05520	ASE31_15365	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.938
KRC19097.1	KRC28221.1	ASE31_05520	ASE31_15375	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.877
KRC19281.1	KRC15020.1	ASE31_06615	ASE31_08790	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	Iron deficiency-induced protein A; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846