KRC26877.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC26877.1

Phosphate--nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)

Predicted Functional Partners:

ppk

0.859

KRC26876.1

0.697

KRC27055.1

0.684

KRC12921.1

0.663

KRC20849.1

0.543

KRC19064.1

0.542

KRC27358.1

0.542

KRC12903.1

0.504

KRC26875.1

0.499

ppa

0.489

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12903.1	KRC12921.1	ASE31_09990	ASE31_10090	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
KRC12903.1	KRC19064.1	ASE31_09990	ASE31_05330	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
KRC12903.1	KRC20849.1	ASE31_09990	ASE31_24535	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	YgiQ family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
KRC12903.1	KRC26877.1	ASE31_09990	ASE31_15595	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Phosphate--nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
KRC12903.1	KRC27055.1	ASE31_09990	ASE31_16610	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.503
KRC12903.1	KRC27358.1	ASE31_09990	ASE31_18335	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
KRC12921.1	KRC12903.1	ASE31_10090	ASE31_09990	Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.870
KRC12921.1	KRC19064.1	ASE31_10090	ASE31_05330	Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KRC12921.1	KRC26877.1	ASE31_10090	ASE31_15595	Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate--nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
KRC12921.1	KRC27055.1	ASE31_10090	ASE31_16610	Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
KRC12921.1	KRC27358.1	ASE31_10090	ASE31_18335	Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.611
KRC19064.1	KRC12903.1	ASE31_05330	ASE31_09990	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.819
KRC19064.1	KRC12921.1	ASE31_05330	ASE31_10090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c oxidase accessory protein CcoG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
KRC19064.1	KRC26877.1	ASE31_05330	ASE31_15595	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate--nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.542
KRC19064.1	KRC27055.1	ASE31_05330	ASE31_16610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.404
KRC20849.1	KRC12903.1	ASE31_24535	ASE31_09990	YgiQ family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Coproporphyrinogen III oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the anaerobic coproporphyrinogen-III oxidase family.	0.419
KRC20849.1	KRC26877.1	ASE31_24535	ASE31_15595	YgiQ family radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate--nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
KRC26875.1	KRC26876.1	ASE31_15585	ASE31_15590	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
KRC26875.1	KRC26877.1	ASE31_15585	ASE31_15595	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphate--nucleotide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.499
KRC26876.1	KRC26875.1	ASE31_15590	ASE31_15585	AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Zn-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650