KRC26938.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC26938.1

Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (114 aa)

Predicted Functional Partners:

KRC26939.1

0.950

KRC29473.1

0.764

KRC27945.1

0.728

KRC26940.1

0.538

KRC18346.1

0.438

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC18346.1	KRC26938.1	ASE31_27485	ASE31_15945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
KRC18346.1	KRC26939.1	ASE31_27485	ASE31_15950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
KRC18346.1	KRC27945.1	ASE31_27485	ASE31_14190	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KRC26938.1	KRC18346.1	ASE31_15945	ASE31_27485	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.438
KRC26938.1	KRC26939.1	ASE31_15945	ASE31_15950	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KRC26938.1	KRC26940.1	ASE31_15945	ASE31_15955	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KRC26938.1	KRC27945.1	ASE31_15945	ASE31_14190	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KRC26938.1	KRC29473.1	ASE31_15945	ASE31_12275	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KRC26939.1	KRC18346.1	ASE31_15950	ASE31_27485	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.530
KRC26939.1	KRC26938.1	ASE31_15950	ASE31_15945	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KRC26939.1	KRC26940.1	ASE31_15950	ASE31_15955	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KRC26939.1	KRC29473.1	ASE31_15950	ASE31_12275	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KRC26940.1	KRC26938.1	ASE31_15955	ASE31_15945	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KRC26940.1	KRC26939.1	ASE31_15955	ASE31_15950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.538
KRC27945.1	KRC18346.1	ASE31_14190	ASE31_27485	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.548
KRC27945.1	KRC26938.1	ASE31_14190	ASE31_15945	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.728
KRC27945.1	KRC29473.1	ASE31_14190	ASE31_12275	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
KRC29473.1	KRC26938.1	ASE31_12275	ASE31_15945	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Antibiotic biosynthesis monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KRC29473.1	KRC26939.1	ASE31_12275	ASE31_15950	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KRC29473.1	KRC27945.1	ASE31_12275	ASE31_14190	ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750