KRC26960.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC26960.1

Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)

Predicted Functional Partners:

KRC26958.1

0.971

KRC26959.1

0.958

KRC14858.1

0.716

KRC23497.1

0.715

ASE31_11220

0.629

KRC27322.1

0.629

KRC21440.1

0.629

KRC27390.1

0.562

KRC23326.1

0.544

KRC14681.1

0.544

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_11220	KRC14681.1	ASE31_11220	ASE31_07950	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570
ASE31_11220	KRC23326.1	ASE31_11220	ASE31_01555	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
ASE31_11220	KRC26960.1	ASE31_11220	ASE31_16075	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
KRC14681.1	ASE31_11220	ASE31_07950	ASE31_11220	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.570
KRC14681.1	KRC21440.1	ASE31_07950	ASE31_23545	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
KRC14681.1	KRC23326.1	ASE31_07950	ASE31_01555	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KRC14681.1	KRC26958.1	ASE31_07950	ASE31_16065	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC14681.1	KRC26960.1	ASE31_07950	ASE31_16075	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
KRC14681.1	KRC27322.1	ASE31_07950	ASE31_18115	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC14858.1	KRC23497.1	ASE31_08950	ASE31_02495	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aminobenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
KRC14858.1	KRC26959.1	ASE31_08950	ASE31_16070	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
KRC14858.1	KRC26960.1	ASE31_08950	ASE31_16075	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.716
KRC21440.1	KRC14681.1	ASE31_23545	ASE31_07950	NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
KRC21440.1	KRC23326.1	ASE31_23545	ASE31_01555	NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC21440.1	KRC26960.1	ASE31_23545	ASE31_16075	NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
KRC23326.1	ASE31_11220	ASE31_01555	ASE31_11220	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.463
KRC23326.1	KRC14681.1	ASE31_01555	ASE31_07950	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carbohydrate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KRC23326.1	KRC21440.1	ASE31_01555	ASE31_23545	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC23326.1	KRC26958.1	ASE31_01555	ASE31_16065	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC23326.1	KRC26960.1	ASE31_01555	ASE31_16075	Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544