KRC27059.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC27059.1

Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (484 aa)

Predicted Functional Partners:

KRC14858.1

0.648

KRC27061.1

0.561

KRC27060.1

0.558

KRC23607.1

0.447

KRC23546.1

0.442

KRC16924.1

0.441

KRC19268.1

0.433

KRC18423.1

0.433

KRC11745.1

0.426

KRC25143.1

0.424

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC11745.1	KRC14858.1	ASE31_11120	ASE31_08950	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC11745.1	KRC27059.1	ASE31_11120	ASE31_16635	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
KRC14858.1	KRC11745.1	ASE31_08950	ASE31_11120	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC16924.1	ASE31_08950	ASE31_07430	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC18423.1	ASE31_08950	ASE31_27920	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC19268.1	ASE31_08950	ASE31_06535	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC23546.1	ASE31_08950	ASE31_02810	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC23607.1	ASE31_08950	ASE31_03155	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC25143.1	ASE31_08950	ASE31_19615	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC14858.1	KRC27059.1	ASE31_08950	ASE31_16635	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC16924.1	KRC14858.1	ASE31_07430	ASE31_08950	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC16924.1	KRC27059.1	ASE31_07430	ASE31_16635	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
KRC18423.1	KRC14858.1	ASE31_27920	ASE31_08950	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC18423.1	KRC27059.1	ASE31_27920	ASE31_16635	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
KRC19268.1	KRC14858.1	ASE31_06535	ASE31_08950	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC19268.1	KRC27059.1	ASE31_06535	ASE31_16635	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
KRC23546.1	KRC14858.1	ASE31_02810	ASE31_08950	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC23546.1	KRC27059.1	ASE31_02810	ASE31_16635	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
KRC23607.1	KRC14858.1	ASE31_03155	ASE31_08950	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.648
KRC23607.1	KRC27059.1	ASE31_03155	ASE31_16635	2-aminoadipate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.447