KRC27103.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC27103.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)

Predicted Functional Partners:

KRC27102.1

0.948

KRC27101.1

0.934

KRC27100.1

0.779

KRC22588.1

0.779

KRC22589.1

0.779

KRC22590.1

0.779

KRC18494.1

0.722

KRC12852.1

0.686

KRC27335.1

0.557

KRC27104.1

0.538

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12852.1	KRC27103.1	ASE31_10545	ASE31_16860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
KRC18494.1	KRC22588.1	ASE31_27510	ASE31_22205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KRC18494.1	KRC22589.1	ASE31_27510	ASE31_22210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KRC18494.1	KRC22590.1	ASE31_27510	ASE31_22215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.684
KRC18494.1	KRC27100.1	ASE31_27510	ASE31_16845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.711
KRC18494.1	KRC27101.1	ASE31_27510	ASE31_16850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.670
KRC18494.1	KRC27102.1	ASE31_27510	ASE31_16855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparaginyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.746
KRC18494.1	KRC27103.1	ASE31_27510	ASE31_16860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
KRC22588.1	KRC18494.1	ASE31_22205	ASE31_27510	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.693
KRC22588.1	KRC22589.1	ASE31_22205	ASE31_22210	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
KRC22588.1	KRC22590.1	ASE31_22205	ASE31_22215	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
KRC22588.1	KRC27101.1	ASE31_22205	ASE31_16850	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.591
KRC22588.1	KRC27102.1	ASE31_22205	ASE31_16855	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparaginyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KRC22588.1	KRC27103.1	ASE31_22205	ASE31_16860	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KRC22589.1	KRC18494.1	ASE31_22210	ASE31_27510	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KRC22589.1	KRC22588.1	ASE31_22210	ASE31_22205	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
KRC22589.1	KRC22590.1	ASE31_22210	ASE31_22215	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.675
KRC22589.1	KRC27101.1	ASE31_22210	ASE31_16850	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.577
KRC22589.1	KRC27102.1	ASE31_22210	ASE31_16855	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Asparaginyl beta-hydroxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KRC22589.1	KRC27103.1	ASE31_22210	ASE31_16860	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779