KRC27273.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC27273.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)

Predicted Functional Partners:

KRC30643.1

0.676

KRC27780.1

0.676

KRC23512.1

0.658

KRC27106.1

0.630

KRC19194.1

0.628

KRC18240.1

0.610

KRC29559.1

0.594

KRC30617.1

0.590

KRC19134.1

0.568

KRC27272.1

0.560

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC18240.1	KRC19194.1	ASE31_26870	ASE31_06095	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KRC18240.1	KRC23512.1	ASE31_26870	ASE31_02580	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KRC18240.1	KRC27106.1	ASE31_26870	ASE31_16875	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
KRC18240.1	KRC27273.1	ASE31_26870	ASE31_17850	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
KRC18240.1	KRC27780.1	ASE31_26870	ASE31_13250	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.731
KRC18240.1	KRC29559.1	ASE31_26870	ASE31_12815	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
KRC19134.1	KRC27106.1	ASE31_05740	ASE31_16875	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC19134.1	KRC27273.1	ASE31_05740	ASE31_17850	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.568
KRC19194.1	KRC18240.1	ASE31_06095	ASE31_26870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KRC19194.1	KRC23512.1	ASE31_06095	ASE31_02580	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
KRC19194.1	KRC27273.1	ASE31_06095	ASE31_17850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
KRC19194.1	KRC27780.1	ASE31_06095	ASE31_13250	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
KRC23512.1	KRC18240.1	ASE31_02580	ASE31_26870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.550
KRC23512.1	KRC19194.1	ASE31_02580	ASE31_06095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.692
KRC23512.1	KRC27106.1	ASE31_02580	ASE31_16875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KRC23512.1	KRC27273.1	ASE31_02580	ASE31_17850	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC27106.1	KRC18240.1	ASE31_16875	ASE31_26870	Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
KRC27106.1	KRC19134.1	ASE31_16875	ASE31_05740	Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC27106.1	KRC23512.1	ASE31_16875	ASE31_02580	Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KRC27106.1	KRC27273.1	ASE31_16875	ASE31_17850	Barnase inhibitor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.630