KRC27301.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

KRC27301.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa)

Predicted Functional Partners:

KRC27300.1

0.985

KRC27299.1

0.947

KRC27298.1

0.946

KRC27302.1

0.867

KRC27297.1

0.574

KRC27296.1

0.566

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC27296.1	KRC27297.1	ASE31_17970	ASE31_17975	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
KRC27296.1	KRC27298.1	ASE31_17970	ASE31_17980	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KRC27296.1	KRC27299.1	ASE31_17970	ASE31_17985	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KRC27296.1	KRC27300.1	ASE31_17970	ASE31_17990	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KRC27296.1	KRC27301.1	ASE31_17970	ASE31_17995	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KRC27297.1	KRC27296.1	ASE31_17975	ASE31_17970	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
KRC27297.1	KRC27298.1	ASE31_17975	ASE31_17980	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC27297.1	KRC27299.1	ASE31_17975	ASE31_17985	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC27297.1	KRC27300.1	ASE31_17975	ASE31_17990	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC27297.1	KRC27301.1	ASE31_17975	ASE31_17995	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC27298.1	KRC27296.1	ASE31_17980	ASE31_17970	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KRC27298.1	KRC27297.1	ASE31_17980	ASE31_17975	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC27298.1	KRC27299.1	ASE31_17980	ASE31_17985	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
KRC27298.1	KRC27300.1	ASE31_17980	ASE31_17990	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
KRC27298.1	KRC27301.1	ASE31_17980	ASE31_17995	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.946
KRC27298.1	KRC27302.1	ASE31_17980	ASE31_18000	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.861
KRC27299.1	KRC27296.1	ASE31_17985	ASE31_17970	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	uracil-DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KRC27299.1	KRC27297.1	ASE31_17985	ASE31_17975	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Biotin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.574
KRC27299.1	KRC27298.1	ASE31_17985	ASE31_17980	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.952
KRC27299.1	KRC27300.1	ASE31_17985	ASE31_17990	Fimbrial assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999