KRC27316.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC27316.1

4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)

Predicted Functional Partners:

KRC27317.1

0.993

KRC27321.1

0.930

KRC27320.1

0.928

KRC27319.1

0.917

KRC27322.1

0.906

KRC14971.1

0.827

KRC20957.1

0.821

KRC12842.1

0.799

KRC23215.1

0.791

KRC27315.1

0.764

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12842.1	KRC27316.1	ASE31_10480	ASE31_18085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
KRC14971.1	KRC27316.1	ASE31_09610	ASE31_18085	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.827
KRC14971.1	KRC27317.1	ASE31_09610	ASE31_18090	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
KRC20957.1	KRC23215.1	ASE31_25180	ASE31_00905	3-methylitaconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KRC20957.1	KRC27316.1	ASE31_25180	ASE31_18085	3-methylitaconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
KRC20957.1	KRC27319.1	ASE31_25180	ASE31_18100	3-methylitaconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KRC20957.1	KRC27320.1	ASE31_25180	ASE31_18105	3-methylitaconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.818
KRC20957.1	KRC27321.1	ASE31_25180	ASE31_18110	3-methylitaconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
KRC23215.1	KRC20957.1	ASE31_00905	ASE31_25180	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-methylitaconate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.683
KRC23215.1	KRC27316.1	ASE31_00905	ASE31_18085	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
KRC23215.1	KRC27317.1	ASE31_00905	ASE31_18090	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.690
KRC23215.1	KRC27320.1	ASE31_00905	ASE31_18105	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KRC23215.1	KRC27321.1	ASE31_00905	ASE31_18110	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.924
KRC23215.1	KRC27322.1	ASE31_00905	ASE31_18115	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.913
KRC27315.1	KRC27316.1	ASE31_18080	ASE31_18085	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
KRC27315.1	KRC27317.1	ASE31_18080	ASE31_18090	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
KRC27315.1	KRC27319.1	ASE31_18080	ASE31_18100	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2-pyrone-4,6-dicarboxylate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
KRC27315.1	KRC27320.1	ASE31_18080	ASE31_18105	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.636
KRC27315.1	KRC27321.1	ASE31_18080	ASE31_18110	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Extradiol catechol dioxygenase that catalyzes the oxidative cleavage of substituted catechols; part of the bacterial aromatic compound degradation pathway; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.638
KRC27315.1	KRC27322.1	ASE31_18080	ASE31_18115	Molybdenum ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549