KRC26108.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC26108.1

MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)

Predicted Functional Partners:

KRC27332.1

0.578

KRC25670.1

0.567

KRC25682.1

0.567

KRC26107.1

0.555

rpsA

0.553

KRC26109.1

0.409

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC25670.1	KRC25682.1	ASE31_19095	ASE31_19160	Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KRC25670.1	KRC26108.1	ASE31_19095	ASE31_18720	Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
KRC25670.1	KRC27332.1	ASE31_19095	ASE31_18175	Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.798
KRC25670.1	rpsA	ASE31_19095	ASE31_08935	Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.696
KRC25682.1	KRC25670.1	ASE31_19160	ASE31_19095	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
KRC25682.1	KRC26108.1	ASE31_19160	ASE31_18720	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
KRC25682.1	KRC27332.1	ASE31_19160	ASE31_18175	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.798
KRC25682.1	rpsA	ASE31_19160	ASE31_08935	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.696
KRC26107.1	KRC26108.1	ASE31_18715	ASE31_18720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.555
KRC26108.1	KRC25670.1	ASE31_18720	ASE31_19095	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
KRC26108.1	KRC25682.1	ASE31_18720	ASE31_19160	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.567
KRC26108.1	KRC26107.1	ASE31_18720	ASE31_18715	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.555
KRC26108.1	KRC26109.1	ASE31_18720	ASE31_18725	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.409
KRC26108.1	KRC27332.1	ASE31_18720	ASE31_18175	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.578
KRC26108.1	rpsA	ASE31_18720	ASE31_08935	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.553
KRC26109.1	KRC26108.1	ASE31_18725	ASE31_18720	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.409
KRC27332.1	KRC25670.1	ASE31_18175	ASE31_19095	Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
KRC27332.1	KRC25682.1	ASE31_18175	ASE31_19160	Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
KRC27332.1	KRC26108.1	ASE31_18175	ASE31_18720	Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	MATE family efflux transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.578
KRC27332.1	rpsA	ASE31_18175	ASE31_08935	Glyceraldehyde-3-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.	0.749