KRC25683.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC25683.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)

Predicted Functional Partners:

KRC25742.1

0.773

KRC25682.1

0.697

KRC25684.1

0.476

KRC25681.1

0.452

KRC25685.1

0.400

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC25681.1	KRC25682.1	ASE31_19155	ASE31_19160	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
KRC25681.1	KRC25683.1	ASE31_19155	ASE31_19165	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
KRC25681.1	KRC25742.1	ASE31_19155	ASE31_19170	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
KRC25682.1	KRC25681.1	ASE31_19160	ASE31_19155	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
KRC25682.1	KRC25683.1	ASE31_19160	ASE31_19165	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
KRC25682.1	KRC25684.1	ASE31_19160	ASE31_19175	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KRC25682.1	KRC25742.1	ASE31_19160	ASE31_19170	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
KRC25683.1	KRC25681.1	ASE31_19165	ASE31_19155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
KRC25683.1	KRC25682.1	ASE31_19165	ASE31_19160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.697
KRC25683.1	KRC25684.1	ASE31_19165	ASE31_19175	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
KRC25683.1	KRC25685.1	ASE31_19165	ASE31_19180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
KRC25683.1	KRC25742.1	ASE31_19165	ASE31_19170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
KRC25684.1	KRC25682.1	ASE31_19175	ASE31_19160	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.435
KRC25684.1	KRC25683.1	ASE31_19175	ASE31_19165	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
KRC25684.1	KRC25685.1	ASE31_19175	ASE31_19180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system response regulator; Transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
KRC25684.1	KRC25742.1	ASE31_19175	ASE31_19170	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
KRC25685.1	KRC25683.1	ASE31_19180	ASE31_19165	Two-component system response regulator; Transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
KRC25685.1	KRC25684.1	ASE31_19180	ASE31_19175	Two-component system response regulator; Transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.631
KRC25685.1	KRC25742.1	ASE31_19180	ASE31_19170	Two-component system response regulator; Transcriptional activator of tricarboxylate transport system genes; Derived by automated computational analysis using gene prediction method: Protein Homology.	Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
KRC25742.1	KRC25681.1	ASE31_19170	ASE31_19155	Desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452