KRC25692.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC25692.1

ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)

Predicted Functional Partners:

KRC24030.1

0.660

KRC29491.1

0.594

KRC25693.1

0.551

KRC23654.1

0.515

KRC17640.1

0.507

KRC30687.1

0.501

KRC30717.1

0.483

ASE31_25595

0.480

KRC17550.1

0.460

KRC14671.1

0.449

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_25595	KRC24030.1	ASE31_25595	ASE31_04205	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
ASE31_25595	KRC25692.1	ASE31_25595	ASE31_19220	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
ASE31_25595	KRC30687.1	ASE31_25595	ASE31_00445	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
KRC14671.1	KRC25692.1	ASE31_07890	ASE31_19220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
KRC17550.1	KRC24030.1	ASE31_29185	ASE31_04205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC17550.1	KRC25692.1	ASE31_29185	ASE31_19220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KRC17640.1	KRC24030.1	ASE31_29680	ASE31_04205	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KRC17640.1	KRC25692.1	ASE31_29680	ASE31_19220	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KRC23654.1	KRC25692.1	ASE31_03420	ASE31_19220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
KRC23654.1	KRC29491.1	ASE31_03420	ASE31_12385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.557
KRC24030.1	ASE31_25595	ASE31_04205	ASE31_25595	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.504
KRC24030.1	KRC17550.1	ASE31_04205	ASE31_29185	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KRC24030.1	KRC17640.1	ASE31_04205	ASE31_29680	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KRC24030.1	KRC25692.1	ASE31_04205	ASE31_19220	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660
KRC25692.1	ASE31_25595	ASE31_19220	ASE31_25595	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
KRC25692.1	KRC14671.1	ASE31_19220	ASE31_07890	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.449
KRC25692.1	KRC17550.1	ASE31_19220	ASE31_29185	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
KRC25692.1	KRC17640.1	ASE31_19220	ASE31_29680	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NIPSNAP family containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
KRC25692.1	KRC23654.1	ASE31_19220	ASE31_03420	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.515
KRC25692.1	KRC24030.1	ASE31_19220	ASE31_04205	ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	N-terminal cleavage protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.660