KRC24713.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC24713.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (509 aa)

Predicted Functional Partners:

KRC24712.1

0.776

KRC18241.1

0.733

ASE31_25610

0.722

KRC21375.1

0.660

pepA

0.652

mutS

0.542

KRC12662.1

0.502

KRC24301.1

0.477

KRC12836.1

0.424

KRC28188.1

0.414

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_25610	KRC12662.1	ASE31_25610	ASE31_10965	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
ASE31_25610	KRC12836.1	ASE31_25610	ASE31_10445	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ASE31_25610	KRC18241.1	ASE31_25610	ASE31_26875	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
ASE31_25610	KRC21375.1	ASE31_25610	ASE31_23180	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.776
ASE31_25610	KRC24713.1	ASE31_25610	ASE31_19745	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.722
ASE31_25610	KRC28188.1	ASE31_25610	ASE31_13905	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
ASE31_25610	pepA	ASE31_25610	ASE31_24765	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.	0.748
KRC12662.1	ASE31_25610	ASE31_10965	ASE31_25610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.944
KRC12662.1	KRC21375.1	ASE31_10965	ASE31_23180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
KRC12662.1	KRC24713.1	ASE31_10965	ASE31_19745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.502
KRC12836.1	ASE31_25610	ASE31_10445	ASE31_25610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.931
KRC12836.1	KRC21375.1	ASE31_10445	ASE31_23180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
KRC12836.1	KRC24713.1	ASE31_10445	ASE31_19745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.424
KRC12836.1	KRC28188.1	ASE31_10445	ASE31_13905	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
KRC18241.1	ASE31_25610	ASE31_26875	ASE31_25610	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.823
KRC18241.1	KRC21375.1	ASE31_26875	ASE31_23180	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KRC18241.1	KRC24713.1	ASE31_26875	ASE31_19745	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.733
KRC21375.1	ASE31_25610	ASE31_23180	ASE31_25610	Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Uncharacterized protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.776
KRC21375.1	KRC12662.1	ASE31_23180	ASE31_10965	Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.477
KRC21375.1	KRC12836.1	ASE31_23180	ASE31_10445	Stomatin 2; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508