KRC24725.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KRC24725.1

Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)

Predicted Functional Partners:

KRC23885.1

0.844

KRC23884.1

0.819

KRC12834.1

0.734

KRC24908.1

0.724

KRC24726.1

0.658

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KRC12834.1	KRC23884.1	ASE31_10435	ASE31_04700	Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KRC12834.1	KRC23885.1	ASE31_10435	ASE31_04705	Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
KRC12834.1	KRC24725.1	ASE31_10435	ASE31_19805	Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
KRC23884.1	KRC12834.1	ASE31_04700	ASE31_10435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
KRC23884.1	KRC23885.1	ASE31_04700	ASE31_04705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KRC23884.1	KRC24725.1	ASE31_04700	ASE31_19805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
KRC23884.1	KRC24908.1	ASE31_04700	ASE31_19980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
KRC23885.1	KRC12834.1	ASE31_04705	ASE31_10435	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.829
KRC23885.1	KRC23884.1	ASE31_04705	ASE31_04700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
KRC23885.1	KRC24725.1	ASE31_04705	ASE31_19805	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
KRC23885.1	KRC24908.1	ASE31_04705	ASE31_19980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
KRC24725.1	KRC12834.1	ASE31_19805	ASE31_10435	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine protease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
KRC24725.1	KRC23884.1	ASE31_19805	ASE31_04700	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.819
KRC24725.1	KRC23885.1	ASE31_19805	ASE31_04705	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.844
KRC24725.1	KRC24726.1	ASE31_19805	ASE31_19810	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC24725.1	KRC24908.1	ASE31_19805	ASE31_19980	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724
KRC24726.1	KRC24725.1	ASE31_19810	ASE31_19805	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.658
KRC24908.1	KRC23884.1	ASE31_19980	ASE31_04700	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
KRC24908.1	KRC23885.1	ASE31_19980	ASE31_04705	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.826
KRC24908.1	KRC24725.1	ASE31_19980	ASE31_19805	Transglutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.724