KRC24730.1 protein (Acidovorax sp. Root217) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KRC24730.1

Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (597 aa)

Predicted Functional Partners:

KRC17491.1

0.851

KRC19166.1

0.828

KRC24781.1

0.826

KRC16836.1

0.820

KRC14870.1

0.803

KRC29450.1

0.801

KRC27136.1

0.801

KRC17454.1

0.801

ASE31_26155

0.800

KRC24729.1

0.786

Your Current Organism:

Acidovorax sp. Root217

NCBI taxonomy Id: 1736492
Other names: A. sp. Root217

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASE31_26155	KRC14870.1	ASE31_26155	ASE31_09030	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
ASE31_26155	KRC16836.1	ASE31_26155	ASE31_06895	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASE31_26155	KRC17454.1	ASE31_26155	ASE31_29980	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASE31_26155	KRC17491.1	ASE31_26155	ASE31_30220	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
ASE31_26155	KRC19166.1	ASE31_26155	ASE31_05925	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
ASE31_26155	KRC24729.1	ASE31_26155	ASE31_19830	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
ASE31_26155	KRC24730.1	ASE31_26155	ASE31_19835	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
ASE31_26155	KRC24781.1	ASE31_26155	ASE31_20120	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
ASE31_26155	KRC27136.1	ASE31_26155	ASE31_17035	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
ASE31_26155	KRC29450.1	ASE31_26155	ASE31_12145	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KRC14870.1	ASE31_26155	ASE31_09030	ASE31_26155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
KRC14870.1	KRC16836.1	ASE31_09030	ASE31_06895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
KRC14870.1	KRC17454.1	ASE31_09030	ASE31_29980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
KRC14870.1	KRC17491.1	ASE31_09030	ASE31_30220	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
KRC14870.1	KRC19166.1	ASE31_09030	ASE31_05925	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KRC14870.1	KRC24729.1	ASE31_09030	ASE31_19830	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
KRC14870.1	KRC24730.1	ASE31_09030	ASE31_19835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.803
KRC14870.1	KRC24781.1	ASE31_09030	ASE31_20120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
KRC14870.1	KRC27136.1	ASE31_09030	ASE31_17035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.951
KRC14870.1	KRC29450.1	ASE31_09030	ASE31_12145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component system sensor histidine kinase/response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975